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-- MichaelBlinov - 09 Sep 2008

PathwayDB - VCell Integration

Collaborative project between Burnham and UCHC


The goals of this project are:

  • to make resources developed and maintained at Burnham available to VCell users
  • to develop analytical tools for qualitative analysis of Burnham data

The list of major features/functionalities to be added to PathwayDB at Burnham:

    • visualization of PIP networks using Sybil
    • semi-automatic generation of rule-based models
    • custom animation of pathways encoded in a rule-based model

The list of major features/functionalities to be added to VCell:

    • a user-friendly interface for rule-based model generation based on data provided by Burnham
    • a suite for displaying animation models

Aim 1: BioNetGen interface for PathwayDB

Aim 2: VCell tools for import of PathwayDB models

Examples of animation

Topic attachments
I Attachment Action Size Date Who Comment
PDFpdf 2008-08-06-BioPAX-tutorial.pdf manage 2665.1 K 2008-09-09 - 01:09 MichaelBlinov Tutorial for BioPAX
Microsoft Executable fileexe AnimeSYSd3pc.exe manage 3372.3 K 2008-09-09 - 16:45 IonMoraru Sample animation (PC binary)
Topic revision: r2 - 2008-09-09 - 16:57:10 - IonMoraru
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