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Table of SBML language features and which tools support them

Tool Algebraic Rules Rate Rules Assigment Rules Events Delay Time Function Definition Initial Assignment Units on elements Unit definition HasOnly SubstanceUnit Mass units Stoichiometry Math Fast Constraints Compartment dimensions Multiple compartments Annotation xhtml MathML SBOTerm
BioUML DONE DONE DONE DONE DONE DONE DONE DONE read/write, doesn't check, doesn't use in simulation No No No DONE read/write, doesn't use in simulation No No DONE DONE DONE DONE No
Copasi No DONE DONE No No DONE DONE No only model wide units, no units on global parameters subset of units import No No No No No DONE No DONE DONE No
JigCell DONE DONE DONE DONE Event Delays only, no csymbol DONE DONE No DONE DONE DONE DONE DONE DONE No DONE DONE DONE DONE DONE No
MathSBML DONE DONE DONE DONE Event Delays only, no csymbol DONE DONE DONE read/write, doesn't check in simulation DONE DONE DONE DONE read/write, doesn't use in simulation message on violation DONE DONE DONE DONE DONE read/write, doesn't use in simulation
ProcessDB                                          
SBMLOdeSolveR                                          
RoadRunner No DONE DONE DONE no delayed events No DONE DONE DONE - - - - DONE No DONE message on violation - DONE DONE DONE DONE -
VCell No No DONE No No DONE DONE No DONE DONE DONE DONE No DONE No DONE DONE DONE No DONE No
StochSim No No No write only No No No No read some/write No No No No No (next version will) No No No No No No No
SBTOOLBOX2 DONE DONE DONE DONE + delayed events DONE DONE DONE No - - - - DONE DONE No - DONE - DONE DONE -
Tool Algebraic Rules Rate Rules Assigment Rules Events Delay Time Function Definition Initial Assignment Units on elements Unit definition HasOnly SubstanceUnit Mass units Stoichiometry Math Fast Constraints Compartment dimensions Multiple compartments Annotation xhtml MathML SBOTerm

In addition some tools possess some of those features, although they do not import/export them in SBML:

Tool Events Delay Assigment Rules Multiple compartments
ECell DONE No DONE DONE
XPP No DONE DONE not applicable
Topic revision: r22 - 2008-08-28 - 09:19:23 - IonMoraru
 
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